Package index • CSCORE

CS-CORE functions

Functions for inferring cell-type-specific co-expression networks

CSCORE(): CS-CORE for cell-type-specific co-expression network inference

CSCORE_IRLS_cpp(): Iteratively reweighted least squares (IRLS) procedure in CS-CORE (Rcpp)

CSCORE_IRLS_base(): Iteratively reweighted least squares (IRLS) procedure in CS-CORE (base R, archived)

post_process_est(): Post-process IRLS estimates

WLS_mean(): Weighted Least Squares Mean and Variance Estimation (Rcpp)

WLS_cov(): Weighted Least Squares Covariance Estimation (Rcpp)

Supporting data sets

Data sets for illustrative purposes

ind_gene_pair: A simulated independent gene pair

top_enrich_go: Top GO enrichment result in the CS-CORE vignette