Package index • CSCORE

CS-CORE functions

Functions for inferring cell-type-specific co-expression networks

CSCORE(): CS-CORE for cell-type-specific co-expression network inference
diff_CSCORE(): Differential co-expression analysis with CS-CORE
CSCORE_IRLS_cpp(): Iteratively reweighted least squares (IRLS) procedure in CS-CORE (Rcpp)
CSCORE_IRLS_base(): Iteratively reweighted least squares (IRLS) procedure in CS-CORE (base R, archived)
post_process_est(): Post-process IRLS estimates
WLS_mean(): Weighted Least Squares Mean and Variance Estimation (Rcpp)
WLS_cov(): Weighted Least Squares Covariance Estimation (Rcpp)

Data sets for illustrative purposes

ind_gene_pair: A simulated independent gene pair
top_enrich_go: Top GO enrichment result in the CS-CORE vignette
diff_module_list: Gene modules from the differential co-expression vignette
diff_ego_result: GO enrichment results from the differential co-expression vignette
diff_est_example: Co-expression matrices for the example module in the differential co-expression vignette